Optimized analysis of isotropic high-nuclearity spin clusters with GPU acceleration
نویسندگان
چکیده
The numerical simulation of molecular clusters formed by a finite number of exchange-coupled paramagnetic centers is very relevant for many applications, modeling systems between molecules and extended solids. In the context of realistic scenarios, many centers need to be considered, and thus the required computational effort grows very fast. In a previous work [E. Ramos et al., Comput. Phys. Commun. 181 (2010)], a set of parallel programs were presented with standard message-passing parallelization (MPI) for both anisotropic and isotropic systems. In this work, we have further developed the code for isotropic models. On one hand, the computational cost has been significantly reduced by avoiding some of the matrix diagonalizations, corresponding to blocks with negligible contribution for the particular configuration. On the other hand, we have extended the parallelization in order to exploit available graphics processing units (GPUs). The new MPIGPU paradigm reduces the computational time by at least one additional order of magnitude and enables the resolution of larger problems.
منابع مشابه
Parallel hyperbolic PDE simulation on clusters: Cell versus GPU
Increasingly, high-performance computing is looking towards data-parallel computational devices to enhance computational performance. Two technologies that have received significant attention are IBM’s Cell Processor and NVIDIA’s CUDA programming model for graphics processing unit (GPU) computing. In this paper we investigate the acceleration of parallel hyperbolic partial differential equation...
متن کاملA novel 2-D coordination polymer constructed from high-nuclearity waist drum-like pure Ho48 clusters.
A novel 2-D coordination polymer constructed from high nuclearity nanosized Ho48 clusters was synthesised and structurally characterized using single-crystal X-ray analysis. The Ho48 cluster core with a charming waist drum-like structure was templated by CO3(2-) ions, and bridged by Ho-N bonds to get a 2-D coordination polymer.
متن کاملExploring utilisation of GPU for database applications
This study is devoted to exploring possible applications of GPU technology for acceleration of the database access. We use the n-gram based approximate text search engine as a test bed for GPU based acceleration algorithms. Two solutions hybrid CPU/GPU and pure GPU algorithms for query processing are studied and compared with the baseline CPU algorithm as well as with the optimized versions of ...
متن کاملElectronic Structure Investigation of Octahedral Complex and Nano ring by NBO Analysis: An EPR Study
To calculation non-bonded interaction of the [CoCl6]3- complex embedded in nano ring, we focus on the single wall boron-nitride B18N18 nano ring. Thus, the geometry of B18N18 nano ring has been optimized by B3LYP method with EPR-II (Electron paramagnetic resonance) basis set and geometry of the [CoCl6]3- complex has been optimized at B3LYP method with Aldrich’s VTZ basis set and Stuttgart RSC 1...
متن کاملMagic Numbers in Polygonal and Polyhedral Clusters
Certain values for the nuclearity of clusters tend to occur more frequently than others. This paper gives a mathematical derivation of the preferred values of nuclearity (the “magic numbers”) corresponding to various symmetrical, close-packed polygons (in two dimensions) and polyhedra (in three dimensions). Simple general formulas are obtained for the numbers of atoms in these clusters. Explici...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Computer Physics Communications
دوره 209 شماره
صفحات -
تاریخ انتشار 2016